BIOLOGICAL SEQUENCE ANALYSIS

Math/Stats 547 (Lecture) and 548 (Lab) MWF, 9-10 (1084 East Hall); Fri, 10-11 (B743 East Hall)

 

Syllabus

Assignments

Lab Worksheets

548 Resources

Web Resources

Term Project

Speaker Schedule

Outside Seminars

Contact Instructor

The 548 Laboratory Worksheets:

These worksheets are from Winter term, 2003.

March 4, 2003 Making profile HMM's; editing MSA's.
March 11, 2003 Fused actin-HSP HMM; first phylogeny exercises.
March 18, 2003 Outliers in phylogeny trees; tRNA synthetase Project.
March 25, 2003 tRNA-synthetase: complete the alignment. Class I and II .
April 1, 2003 tRNA synthetases: family groupings; across species.
April 8, 2003 Codon Usage Bias/PHX Data Collection. (Hard Copy Not Available)
April 15, 2003 TrpB-synthase across species, and the chronology of amino acids.
End of Term Procedures.