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What is the Bioinformatics Journal Club?
Bioinformatics Journal Club entails a weekly discussion of current and
classic papers concerning biology on a whole-genome scale, or using genome
sequence based approaches. It is a great opportunity for students/ researchers
to be exposed to current topics of Bioinformatics. Although the presentations
are on a volunteer basis, participants are encouraged to present.
Who Can Join?
Anyone interested in Bioinformatics and its current applications to the
life sciences is welcome to participate in the Journal Club. We especially
urge the students in the Bioinformatics program to participate.
Students can enroll in Bioinformatics Journal Club (BI 602) for
one credit. Attendance and presentation are mandatory for BI 602 students.
When and Where are Journal Club Meetings?
Winter 2004:
Meeting schedule: Mondays from 12 PM to 1PM in Room 5631 Medical Science
II building. (Bioinformatics Computer Lab)
Questions?
For further information, contact:
Tom Blackwell
(734) 647-8022
tblackw@umich.edu
Past articles and presenters:
Fall 2001
Winter 2002
Fall 2002
Winter 2003
Fall 2003
Winter 2004
Fall 2004 Schedule
September 13, 2004
Presenter: Arvind Rao
Article: Claudia Rangel, John Angus, Zoubin Ghahramani, Maria Lioumi,
Elizabeth Sotheran, Alessia Gaiba, David L. Wild, Francesco Falciani.
"Modeling T-cell activation using gene expression profiling and
state-space models." Bioinformatics, v.20, n.9, pp. 1361-1372
September 20, 2004
Presenter: Tom Blackwell
Article: Amy Hin Yan Tong, Becky Drees, Giuliano Nardelli, Gary D.
Bader, Barbara Brannetti, Luisa Castagnoli, Marie Evangelista, Silvia
Ferracuti, Bryce Nelson, Serena Paoluzi, Michele Quondam, Adriana Zucconi,
Christopher W. V. Hogue, Stanley Fields, Charles Boone, Gianni Cesareni.
"A combined experimental and computational strategy to define
protein interaction networks for peptide recognition modules."
Science, v.295, n.5553, pp.321-324 (2002)
September 27, 2004
Presenter:
Article:
October 4, 2004
Presenter:
Article:
October 11, 2004
Presenter:
Article:
October 18, 2004 - Cancelled Fall Recess
October 25, 2004
Presenter:
Article:
November 1, 2004
Presenter:
Article:
November 8, 2004
Presenter: Abhik Shah
Article:
November 15, 2004
Presenter: Minsoung Rhee
Article:Jiunn B. Heng, Chuen Ho, Taekyung Kim, Rolf Timp,
Aleksij Aksimentiev, Yelena V. Grinkova, Stephen Sligar, Klaus
Schulten, Gregory Timp. ``Sizing DNA using a nanometer
diameter pore." Biophysical
Journal, v.87, n.4, pp.2905-2911, October, 2004.
November 22, 2004
Presenter: Omar Halawa
Article: BP Lewis, IH Shih, MW Jones-Rhoades, DP Bartel, CB
Burge. ``Prediction of mammalian microRNA targets"
Cell,
v.115, n.7, pp.787-798, Dec. 26, 2003
November 29, 2004
Presenter: Ed Barbour
Article:H Fraser, A Hirsch, D Wall and M Eisen, ``Coevolution of gene expression among interacting proteins", PNAS, v. 101 (2004), 9033-9038.
December 6, 2004
Presenter: Jin Li
Article:TBA
December 13, 2004
Presenter:Tom Blackwell
Article:M Blanchette, ED Green, W Miller, D Haussler, ``Reconstructing large regions of an ancestral mammalian genome in sililco", Genome Research 14(2004), 2412-2423.
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